Facciotti Federica, PhD

OPEN POSITION

The lab is currently open for applications of both cellular immunology and computational

_PhD candidates

_Master’s thesis (minimum 12 months) candidates

Send applications to Federica.facciotti@unimib.it with CV

Mucosal Immunology Lab (Biomedicine area)

Keywords

Mucosal Immunology, Microbiota, T cells, iNKT cells, Th17, IBD, Crohn’s Disease, Ulcerative Colitis, Colorectal cancer

Research Group

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Federica Facciotti BtBs UNIMIB group

Background

I am a T cell immunologist, with a strong expertise in human chronic autoimmune pathologies. My research interests focus on the role of conventional and unconventional T cells in contributing to tissue homeostasis, in participating to inflammatory immune responses and in the control of epithelial neoplastic transformations. In recent years, I gained interest in the functional interaction between the immune system and the gut microbiota in driving pathogenic or tolerogenic activities in mucosal immune (T) cells.

By taking advantage of a translational approach, comprising the study of both human specimens and of murine models of human pathologies, during my research activity I acquired a broad experience in the study of human autoimmune disorders (Inflammatory Bowel Diseases, Type 1 Diabetes, Systemic Lupus Erythematosus and Rheumatoid Arthritis) as models of deregulation of T cell functions. More recently, I focused on mucosal immunology and on the role of intestinal T cells in contributing to tissue homeostasis and in participating to inflammatory immune responses in IBD and in colorectal cancer.  The study of T cell activation cues in the intestinal microenvironment led me to investigate in depth the functional interplay between intestinal T cells and the gut microbiota.

Research interest

My research group specifically focuses on understanding and functionally manipulating for therapeutic purposes the interactions between the mucosal immune system and the intestinal microenvironment.

The intestinal compartment is a complex biological system composed by different type of cells (immune cells, epithelial cells, gut microbiota) involved in functional crosstalks aimed at maintaining a balance between tolerance and immunity. These interactions may give rise to different functional outcomes. In healthy conditions immune cells contribute to intestinal homeostasis maintenance, while in genetically predisposed individuals hyperactivation of immune cells may lead to in chronic autoimmune intestinal inflammation.  In the context of intestinal tumours, defective activation of immune cells may contribute to decreased immunesurveillance and tumour development.

Specifically, our projects focus at:

-Deciphering the role of conventional and unconventional intestinal CD4+T helper cells in contributing to tissue homeostasis and in participating to inflammatory immune responses;

-Understanding the functions of intestinal T lymphocytes in the control of epithelial neoplastic transformations;

-Dissecting the functional interactions between T cells , the gut microbiota and the intestinal microenvironment during intestinal neoplastic transformation and inflammation

-Manipulating the function of immune cells for therapeutic purposes.

To do so, we take advantage of a translational approach involving in vitro systems, murine models of colorectal cancer and intestinal inflammation, and patients’-derived surgical specimens.

Research projects

The intestinal compartment is a complex environment composed by different type of cells (immune cells, epithelial cells, gut microflora) involved in functional interactions aimed at maintaining a balance between tolerance and immunity. Thus, the research activity of my lab is being oriented by two questions:

-How are conventional and unconventional CD4+T cells functionally influenced by the surrounding microenvironment during homeostatic or pathogenic conditions?

-Is it possible to implement immune cells phenotype and functions for predictive, prognostic or therapeutic purposes, upon elucidation of the mechanisms controlling their activity?”

Specific projects of the lab:

1.The evaluation of the phenotypic and functional status of immune cells isolated from intestinal specimens of sporadic and inflammation-associated colorectal cancer (CRC) patients and the study of the interactions between the immune system and the intestinal tumor microenvironment. In addition, this project aims at investigating how cancer cells might positively or negatively affect T cells activation by expressing specific inhibitory molecules or by displaying cancer-associated lipid antigens (Start-UP AIRC 2013).

2.The evaluation of the interaction between mucosal immune cells isolated from intestinal specimens of sporadic and inflammation-associated colorectal cancer (CRC) patients and the gut microbiota in the immuneregulation of colorectal cancer development (IG-AIRC 2019).

3.The understanding of the behavior of the mucosal immune system during both homeostatic and inflammatory conditions. The requirements for the functional activation of T cell subsets in the gut and which is their functional effect on epithelial cells is being explored with a translational approach involving both murine models of intestinal inflammation and surgical specimens of patients with chronic intestinal inflammation (IBD) (Ministero della Salute Giovani Ricercatori 2013).

4.Recent evidences suggest that imbalances in the composition and in the function of the gut microbiota directly correlate, in genetically predisposed individuals, to autoimmune disease and to cancer development. Thus, a project in the lab aims at understanding how the gut microbiota affects mucosal T cell functions in health and disease (Ministero della Salute Giovani Ricercatori 2016).

Selected articles

1.Burrello C, Garavaglia F, Cribiù FM, Ercoli G, Lopez G, Troisi J, Colucci A, Guglietta S, Carloni S, Guglielmetti S, Taverniti V, Nizzoli G, Bosari S, Caprioli F, Rescigno M, Facciotti F.
Therapeutic fecal microbiota transplantation controls intestinal inflammation through IL10 secretion by immune cells
Nature Communications 2018 Dec 5;9(1):5184. doi: 10.1038/s41467-018-07359-8.

2.Díaz-Basabe A, Burrello C, Lattanzi G, Botti F, Carrara A, Cassinotti E, Caprioli F, Facciotti F
Human Intestinal and Circulating invariant Natural Killer T cells are cytotoxic against Colorectal Cancer cells via the Perforin/Granzyme pathway
Molecular Oncology, accepted 16 September 2021, doi:10.1002/1878-0261.13104

3.Strati F, Pujolassos M, Burrello C, Giuffrè MR, Lattanzi G, Caprioli F, Troisi J, Facciotti F
Antibiotic-associated dysbiosis affects the ability of the gut microbiota to control intestinal inflammation upon faecal microbiota transplantation in experimental colitis models
Microbiome. 2021 Feb 6;9(1):39. doi: 10.1186/s40168-020-00991-x

4.Facciotti F, Ramanjaneyulu GS, Sansano S, Lepore M, Chan RB, Seedorf U, Wenk M, Forss-Petter S, Berger J, Xia C, Mori L, De Libero G
Peroxisome-derived lipids are self-antigens for invariant natural killer T cells
Nature Immunology, Mar 18;13(5):474-8, 2012 doi: 10.1038/ni.2245.


Facciotti’s Lab – #FacciottiLab_BtBs
last update: February 2022

Spotlight on PhD students: Ph.D. thesis defenses XXXIV cycle

Comment by Roberta Torinesi

We are very pleased to announce that our colleagues of the XXXIV cycle will defend their Ph.D. thesis this week:

Jan 26th, 2022: Fabrizio Beltrametti, Erika Casari, Alessandra De Giani (room U3-03)

Jan 28th, 2022: Giulia Agostinetto, Sofia Magli, Nicola Tommasi (room U3-05)

 

Please note: due to COVID restrictions, only a few spots are available in the rooms. Anyway, you can connect through the WebEx platform to show your support.

Thunder Imager Live Cell

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LID

Microscopio THUNDER Imager Live Cell - LEICA Microsystem

Il Thunder Imager Live Cell è un sistema di microscopia a fluorescenza avanzato che incorpora la tecnologia Computational Clearing per eliminare in tempo reale il segnale di fluorescenza dai piani fuori fuoco. E’ in grado di acquisire, analizzare e gestire immagini in fluorescenza, in campo chiaro e in contrasto di fase.

E’ un microscopio rovesciato ad ampio campo, totalmente motorizzato, in grado di analizzare campioni biologici su vetrini, piastre da 35mm, piastre multi pozzetto e sistemi di microfluidica. Il microscopio può analizzare cellule e tessuti fissati ma è particolarmente adatto alle analisi su cellule vive anche per tempi molto lunghi (time-lapse movies).

Caratteristiche principali e peculiari:

Ottima capacità di analisi sia di cellule di lievito che di mammifero in luce trasmessa:
-contrasto di fase
-contrasto interferenziale DIC

Eccitazione luminosa a LED in alta potenza sia per la fluorescenza che per la luce trasmessa
-8 Led indipendenti

LED  395 nm DAPI
LED 438 nm BLUE
LED 475 nm CYAN
LED 511 nm TEAL
LED 555 nm GREEN
LED 575 nm YELLOW
LED 635 nm RED
LED 730 nm NEAR INFRA RED

Torretta policroma a fluorescenza completamente motorizzata a 6 posizioni per filtri dicroici (specchio)
-Filter wheel esterna ad altissima velocità
      Velocità di spostamento 27 ms
-Blocchetti a fluorescenza

Cubo 1 - EX - Dic - EM    
CFP  - 436/28 - 459 - 473/22      
YFP - 506/21 - 523 - 539/24    
mCherry    - 578/24 - 598 - 641/78    
AF750 - 730/40 - 763 - 810/80

Cubo 2 - EX - Dic - EM    
DAPI - 391/32 - 415 - 435/30
FITC - 479/33 - 500 - 519/25
TRITC - 554/24 - 572 - 594/32
Cy5 - 638/31 - 660 - 695/58

Cubo 3 - EX - Dic - EM    
FITC - 470/40 - 495 - 520/40
TXR, mCherry - 573/35 - 595 - 635/65

Obiettivi:
-Obj. HC FL Plan 10x/0.25
-Ob. HC PL FL L 20x/0.40 CORR PH1
-Ob. HC PL FL L 40x/0.60 PH2 CORR
-Ob. HC PL APO 63x/1.40 CORR
-Obj. HC PL APO 100x/1.44 OIL CORR CS

Tavolino motorizzato ad altissima precisione in XYZ

Fotocamera DFC9000 GTC con sensore cMOS e pixel 6.5x6.5 micron

Incubatore Okolab a pannelli oscurati con controllo CO2 e Temperatura

Sistema di autofocus hardware e software AFC (Adaptive Focus Control)
-Autofocus Hardware basato su tecnologia LED a lunghezza d’onda IR

Software:
-Il Software LASX è comune a tutte le piattaforme Leica:
    con piattaforma THUNDER di computational clearing dell’immagine
    con piattaforma di deconvoluzione

Ubicazione dello strumento: Laboratorio 5045, edificio U3, 5°piano
 

Per informazioni:

Dr. Matteo Urbano matteo.urbano@unimib.it  ,   tel 02 6448 3345

Dr.ssa Stefania Citterio stefania.citterio@unimib.it  , tel 02 6448 3341