Facciotti Federica, PhD

OPEN POSITION

The lab is currently open for applications of both cellular immunology and computational

_PhD candidates

_Master’s thesis (minimum 12 months) candidates

Send applications to Federica.facciotti@unimib.it with CV

Mucosal Immunology Lab (Biomedicine area)

Keywords

Mucosal Immunology, Microbiota, T cells, iNKT cells, Th17, IBD, Crohn’s Disease, Ulcerative Colitis, Colorectal cancer

Research Group

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Federica Facciotti BtBs UNIMIB group

Background

I am a T cell immunologist, with a strong expertise in human chronic autoimmune pathologies. My research interests focus on the role of conventional and unconventional T cells in contributing to tissue homeostasis, in participating to inflammatory immune responses and in the control of epithelial neoplastic transformations. In recent years, I gained interest in the functional interaction between the immune system and the gut microbiota in driving pathogenic or tolerogenic activities in mucosal immune (T) cells.

By taking advantage of a translational approach, comprising the study of both human specimens and of murine models of human pathologies, during my research activity I acquired a broad experience in the study of human autoimmune disorders (Inflammatory Bowel Diseases, Type 1 Diabetes, Systemic Lupus Erythematosus and Rheumatoid Arthritis) as models of deregulation of T cell functions. More recently, I focused on mucosal immunology and on the role of intestinal T cells in contributing to tissue homeostasis and in participating to inflammatory immune responses in IBD and in colorectal cancer.  The study of T cell activation cues in the intestinal microenvironment led me to investigate in depth the functional interplay between intestinal T cells and the gut microbiota.

Research interest

My research group specifically focuses on understanding and functionally manipulating for therapeutic purposes the interactions between the mucosal immune system and the intestinal microenvironment.

The intestinal compartment is a complex biological system composed by different type of cells (immune cells, epithelial cells, gut microbiota) involved in functional crosstalks aimed at maintaining a balance between tolerance and immunity. These interactions may give rise to different functional outcomes. In healthy conditions immune cells contribute to intestinal homeostasis maintenance, while in genetically predisposed individuals hyperactivation of immune cells may lead to in chronic autoimmune intestinal inflammation.  In the context of intestinal tumours, defective activation of immune cells may contribute to decreased immunesurveillance and tumour development.

Specifically, our projects focus at:

-Deciphering the role of conventional and unconventional intestinal CD4+T helper cells in contributing to tissue homeostasis and in participating to inflammatory immune responses;

-Understanding the functions of intestinal T lymphocytes in the control of epithelial neoplastic transformations;

-Dissecting the functional interactions between T cells , the gut microbiota and the intestinal microenvironment during intestinal neoplastic transformation and inflammation

-Manipulating the function of immune cells for therapeutic purposes.

To do so, we take advantage of a translational approach involving in vitro systems, murine models of colorectal cancer and intestinal inflammation, and patients’-derived surgical specimens.

Research projects

The intestinal compartment is a complex environment composed by different type of cells (immune cells, epithelial cells, gut microflora) involved in functional interactions aimed at maintaining a balance between tolerance and immunity. Thus, the research activity of my lab is being oriented by two questions:

-How are conventional and unconventional CD4+T cells functionally influenced by the surrounding microenvironment during homeostatic or pathogenic conditions?

-Is it possible to implement immune cells phenotype and functions for predictive, prognostic or therapeutic purposes, upon elucidation of the mechanisms controlling their activity?”

Specific projects of the lab:

1.The evaluation of the phenotypic and functional status of immune cells isolated from intestinal specimens of sporadic and inflammation-associated colorectal cancer (CRC) patients and the study of the interactions between the immune system and the intestinal tumor microenvironment. In addition, this project aims at investigating how cancer cells might positively or negatively affect T cells activation by expressing specific inhibitory molecules or by displaying cancer-associated lipid antigens (Start-UP AIRC 2013).

2.The evaluation of the interaction between mucosal immune cells isolated from intestinal specimens of sporadic and inflammation-associated colorectal cancer (CRC) patients and the gut microbiota in the immuneregulation of colorectal cancer development (IG-AIRC 2019).

3.The understanding of the behavior of the mucosal immune system during both homeostatic and inflammatory conditions. The requirements for the functional activation of T cell subsets in the gut and which is their functional effect on epithelial cells is being explored with a translational approach involving both murine models of intestinal inflammation and surgical specimens of patients with chronic intestinal inflammation (IBD) (Ministero della Salute Giovani Ricercatori 2013).

4.Recent evidences suggest that imbalances in the composition and in the function of the gut microbiota directly correlate, in genetically predisposed individuals, to autoimmune disease and to cancer development. Thus, a project in the lab aims at understanding how the gut microbiota affects mucosal T cell functions in health and disease (Ministero della Salute Giovani Ricercatori 2016).

Selected articles

1.Burrello C, Garavaglia F, Cribiù FM, Ercoli G, Lopez G, Troisi J, Colucci A, Guglietta S, Carloni S, Guglielmetti S, Taverniti V, Nizzoli G, Bosari S, Caprioli F, Rescigno M, Facciotti F.
Therapeutic fecal microbiota transplantation controls intestinal inflammation through IL10 secretion by immune cells
Nature Communications 2018 Dec 5;9(1):5184. doi: 10.1038/s41467-018-07359-8.

2.Díaz-Basabe A, Burrello C, Lattanzi G, Botti F, Carrara A, Cassinotti E, Caprioli F, Facciotti F
Human Intestinal and Circulating invariant Natural Killer T cells are cytotoxic against Colorectal Cancer cells via the Perforin/Granzyme pathway
Molecular Oncology, accepted 16 September 2021, doi:10.1002/1878-0261.13104

3.Strati F, Pujolassos M, Burrello C, Giuffrè MR, Lattanzi G, Caprioli F, Troisi J, Facciotti F
Antibiotic-associated dysbiosis affects the ability of the gut microbiota to control intestinal inflammation upon faecal microbiota transplantation in experimental colitis models
Microbiome. 2021 Feb 6;9(1):39. doi: 10.1186/s40168-020-00991-x

4.Facciotti F, Ramanjaneyulu GS, Sansano S, Lepore M, Chan RB, Seedorf U, Wenk M, Forss-Petter S, Berger J, Xia C, Mori L, De Libero G
Peroxisome-derived lipids are self-antigens for invariant natural killer T cells
Nature Immunology, Mar 18;13(5):474-8, 2012 doi: 10.1038/ni.2245.


Facciotti’s Lab – #FacciottiLab_BtBs
last update: February 2022

Serra Immacolata, PhD

Assistant Professor of Chemistry and Biotechnology of Fermentations

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FOTO sito BtBs Serra Immacolata

 

room 4023, building U4

room 4054, building U4, tel. +39 02 6448 3428

immacolata.serra@unimib.it

see also: Scopus Author ID: 22942087500, Loop

Keywords

Microbial Biotechnology; Biorefinery; Enzymes; Residual biomasses; Biocatalysis; Metabolic engineering

Research interest

The main research interests are:

- Exploitation of microbial biodiversity for the production of chemicals, biofuels and enzymes. In particular, one research line concerns the up-cycling of residual biomasses by microbial bioprocesses for the production, for instance, of single cell oils and lactic acid.  Dr. Serra research activity has dealt also with the characterization of osmotic stress in marine yeasts and in S. cerevisiae by flow cytometry techniques, the identification of enzymatic activities of biocatalytic interest in marine yeasts and the optimization of growth conditions of marine yeasts in order to maximize the expression of the enzymes of interest.

- Biotransformations catalyzed both by isolated enzymes (soluble and immobilized) and by whole cells. Identification, cloning, heterologous expression, characterization and immobilization of enzymes for biocatalytic purposes and their use in batch and flow systems.

Selected articles

-Di Lorenzo R.D., Serra I., Porro D., Branduardi P. State of the art on the microbial production of industrially relevant organic acids (2022) Catalysts, 12 (2), art. no. 234. https://doi.org/10.3390/catal12020234

-Donzella, S., Serra, I., Fumagalli, A., Pellegrino, L., Mosconi, G., Lo Scalzo, R., et al. Recycling industrial food wastes for lipid production by oleaginous yeasts Rhodosporidiobolus azoricus and Cutaneotrichosporon oleaginosum (2022) Biotechnology for Biofuels and Bioproducts, 15(1). DOI: 10.1186/s13068-022-02149-3

-Robescu M.S., Serra I.,* Terreni M., Ubiali D.,* Bavaro T. A multi-enzymatic cascade reaction for the synthesis of vidarabine 5'-monophosphate (2020) Catalysts, 10 (1), art. no. 60. https://doi.org/10.3390/catal10010060

-Serra I., Guidi B., Burgaud G., Contente M.L., Ferraboschi P., Pinto A., Compagno C., Molinari F., Romano D. Seawater-based biocatalytic strategy: stereoselective reductions of ketones with marine yeasts (2016) ChemCatChem, 8 (20), pp. 3254-3260.  https://doi.org/10.1002/cctc.201600947


Serra’s Lab – #SerraLab_BtBs
last update: June
2022

BD FacsMelody - Cell Sorter

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LID

Della Società produttrice Becton e Dickinson Italia S.p.A.

BD FACSMelody è un cell sorter compatto e da banco di ultima generazione. L’allineamento fisso e la tecnologia “cuvette based” garantiscono altissime prestazioni e massima affidabilità. La piattaforma FACSMelody assicura facilità d’uso per l’alto grado di automazione e le procedure guidate  facilitano il raggiungimento di risultati consistenti, senza necessariamente richiedere operatori con alto grado di esperienza. La strumentazione è inserita all’interno di una Cappa Biosafety di Classe II – Tipo A2, in grado di garantire l’operatore e il prodotto.

Caratteristiche

SORGENTE DI ECCITAZIONE
La strumentazione è in grado di rilevare fino a 11 parametri in contemporanea (9 fluorescenze + FSC + SSC). Sono montati 3 laser, spazialmente separati, tra 4 differenti sorgenti luminose: Blu 488 nm (20 mW), Rosso 640 nm (40 mW), Violetto 405 nm (40 mW).

ALLINEAMENTO
La presenza di laser spazialmente separati garantisce un basso rumore di fondo e basse compensazioni.

OTTICA
Lo strumento è dotato di Sistema Ottico a Riflessione.

DIMENSIONE MINIMA DI RILEVAZIONE DELLE PARTICELLE
Lo strumento BD FACSMelody, grazie ad una altissima risoluzione dimensionale e ad una elevata sensibilità sui parametri di fluorescenza, è in grado di distinguere agevolmente dal rumore di fondo particelle fluorescenti del diametro di 100 nanometri (0,1 micron).

ELETTRONICA
Completamente digitale per la processazione dei segnali e l’acquisizione dei dati. Sono acquisibili fino a 40.000 eventi/secondo su undici parametri. Risoluzione: 262144 canali su tutti i parametri con campionamento digitale.

CAMERA DI CONTA
In quarzo gel-coupled, tale da minimizzare il rumore di fondo e garantire la massima sensibilità.

FLUIDICA

  • Aspirazione manuale del campione da provette 12 x 75 in polistirene o polipropilene
  • Controllo della temperatura regolabile via software
  • Agitazione del campione regolabile via software

SORTING
Procedura automatica del setup, nonché ottimizzazione e monitoraggio del brekoff della goccia e degli stream. Tecnologia Accudrop, Tecnologia Sweet Spot.

SISTEMA GESTIONE DATI
Computer Business PC
Sistema Operativo: Microsoft Windows 7 Professional (64-bit) OS
Processore: Intel 2.8G CPU Quad Core
RAM: 8GB
Hard Drives: 500 GB
Monitor 23”LCD
Software gestionale: BD FACSChorus v.1.1

STAMPANTE
HP LASER JET C. 254NW

LASER
BD FACSMelody 3 LASER 4Blu/2Rosso/3Violetto con ACDU – 9 colori

Ubicazione dello strumento: Laboratorio 4034/B, edificio U3, 4°piano.

Per informazioni: Matteo Urbano, 02.6448.3345, Francesca Mingozzi, 02.6448.3519

mattino RESERVED

P01 - Identification of spectroscopic markers of amyotrophic lateral sclerosis

Ami D.1, Ambrosio F.1, Natalello A.1

P02 - Roasting process does not affect anti-inflammatory properties of coffee extracts

Artusa V.1, Ciaramelli C.1, Palmioli A.1, Airoldi C.1, Peri F.1

P03 - Dissecting the role of serine in neurological disorders

Badone B.1, Tripodi F.1, Coccetti P.1

P04 - Biofabrication of a vascularized 3D tissue in vitro model

Barbugian F.1,2, Bodet T. 2, Moroni L.2, Russo L.1, Nicotra F.1

P05 - Enzymatic hydrolysis of Camelina sativa meal for carotenoids production by the yeast Rhodosporidium toruloides

Bertacchi S.1, Cantù C.1, Branduardi P.1

P06 - Charge patterning and phase separation propensity in IDPs: is there a possible interplay?

Bianchi G.1, Dell’Orto L.2, Longhi S.2, Brocca S.1

P07 - Analysis of cadmium effect on neural cells energetic metabolism using Seahorse technology

Bovio F.1, Forcella M.1, Urani C.2, Fusi P.1

P08 - Study of extracellular matrix glycosignature in dictate cell fate using 3D glyco-conjugate biomaterials

Cadamuro F.1, Chiodo F.2, Nicotra F.1, Russo L.1

P09 - Three-dimensional models for the study of breast cancer metabolism

Pasquale V.1,2*, Campioni G.1,2*, Ducci G.1,2, Savore A.1,2, Sacco E.1,2, Vanoni M.1,3

P10 - Dual role of Dpb4 in the DNA damage response

Casari E.1, Gobbini E.1, Calabrese S.1, Clerici M.1, Longhese MP.1

P11 - NMR-based dissection of cocoa anti-amyloidogenic activity

Ciaramelli C.1,4, Palmioli A.1,4, De Luigi A.2, Colombo L.2, Sala G.3,4, Salmona M.2, Airoldi C.1,4

P12 - Developmental effects of β2V287L nAChR subunit on pyramidal neuron morphology in the neocortex

Colombo G.1, Modena D.2, Coatti A.1*, Amadeo A.2, Becchetti A.1

P13 - Effects of Prebiotics and Probiotics on Human Gut Microbiota and Related Immune System: A Study on Healthy and Elderly Subjects

De Giani A.1, Sandionigi A.1, Zampolli J.1, Michelotti A.2, Tursi F.2, Labra M.1, Di Gennaro P.1

P14 - Cardoon roots valorization by combined microbial biotransformation for lactic acid production

Di Lorenzo RD.1, Branduardi P.1

P15 - High-resolution imaging and high-content analysis of mitochondrial efficiency and OXPHOS relevance in grade II bladder cancer cells

Ducci G.1,2, Pasquale V.1,2, Campioni G.1,2, Ventrici A.1, Arrigoni E.1, Vanoni M.1,2, Vago R.3, Sacco E.1,2

P16 - Mechanism of action of new synthetic Toll-Like receptor 4 agonists for the development of innovative vaccine adjuvants

Gotri N.1, Facchini F.A.1, Romerio A.1, Luraghi A.1, Peri F.1